The school is Church founded and Government aided. Kabale Diocese, Brothers of Christian Instruction (FIC), Plus the government oversee the management and facilitation of the institution along with other stake holders. The school has a functional Board of Governors (BOG) and Parents Teachers Association (PTA). There is a strong Old Students Association: Bishop Comboni Old Students Association (BICOSA). All these bodies propose strategies for improving the school. The school administration is headed by the Headteacher, Deputy Headteacher, Heads of departments plus other members of Comboni staff family and prefects.